a) Decouple NdSee, DoubleClicker, DoubleClicker2 from AutoGate app
a) Beta version of FlowJoBridge Version 2
a) Contains version 2 of FlowJo Bridge which is 2-way. EPP and UMAP results are written back to the FlowJo workspace.
a) FlowJo bridge scaling
b) Bug fixes
Bridge to FlowJo
a) Supports comparing FlowJo manual gates with those created by AutoGate’s fully automated gates
(EPP, MLP, UMAP or UST)
b) Transfer AutoGate’s automatic gates to FlowJo
Created and integrated an ON/OFF switch for AutoGate servlets so that they
a) Can be turned or OFF via the global properties file in <HOME>/.autoGate folder
b)No ON/OFF depends on commented code being uncommented
c)JAVA and MATLAB code is in sync
Adds concordance and robust concordance to match table when comparison is between same data.
Improvements to Plot Editor toolbar
V3 of EPP
uses Google Cloud for all remote file downloading instead of tomcat on cytogenie.org.
improves PlotEditor defaults for new user look and feel … mostly related to using ReagentTable instead of 1D PathFinder
~isempty(find(v)) is equivalent to any(v) for vectors v, and the latter is about 3 times as fast. Hence I have made the substitutions everywhere I could find in the code. Also fixed two variables defined too late, marked by “CM” comments. Many formatting improvements and warning removals.
Allow users to work with folder location of FCS files
-if FCS files are downloaded from server (demo server or ANY server) then allow the user to move FROM hidden folder underneath <home>/.autoGate to visible folder … or vice versa
Fixing and improvements to Logicle width basis editing such that the windows with ALL parameters keeps in sync with the windows with only X and Y parameters.
Furthermore PlotEditors do not display out-of-sync cluster borders when W differs.
Sorting of parameters in the window with ALL parameters is case insensitive
Several improvements for EPP paper including speed up of color displaying
Allows logicle W adjustments to be:
1)Temporarily visualized in any open PlotEditor when changing from GatingTree.
2)Updated in non modal biexponential window launched from GatingTree if being changed from non modal window launched from PlotEditor
Minor acceleration to creating of semi-automatic gates
Improvements to confusion chart
Resolved regression impacts due to MLP integration
Fixed subtle bug in SuhRunUmap.m causing the wrong clustering method to be displayed in the legend. Added numerous formatting updates and warning removals.
GUI improvements for MLP feature
Minor improvements to stabilize v4 release of UMAP to Mathworks File Exchange
Improves presentation of Prediction information to adjudicate which classification is more similar to the target
Includes multi-sample training ability for MLP
Improvements for MLP + UST(UMAP Supervised Template)
Major new feature of MLP neural network for supervised gating accuracy
Accelerates (20x faster) creation of special gates for MLP classification and for Prediction Classification
Introduces MultiLayterPerceptron (MLP) neural net classification using both Tensorflow from Python and Fitcnet from MATLAB